Variant report

Variant	rs12277448
Chromosome Location	chr11:15803561-15803562
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12294087	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16932047	0.91[AFR][1000 genomes]
rs16932049	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7106868	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7107032	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7115752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7124181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7126644	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7127009	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051187	chr11:15781277-15846536	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15792600-15805000	Weak transcription	Gastric	stomach
2	chr11:15797000-15805600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:15801400-15803800	Enhancers	Fetal Lung	lung
4	chr11:15802000-15804400	Enhancers	Ovary	ovary
5	chr11:15802600-15805000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:15803400-15803600	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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