Variant report

Variant	rs7106868
Chromosome Location	chr11:15802527-15802528
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12277448	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12294087	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16932047	0.90[AFR][1000 genomes]
rs16932049	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7107032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7115752	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7124181	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7126644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7127009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051187	chr11:15781277-15846536	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15792600-15805000	Weak transcription	Gastric	stomach
2	chr11:15797000-15805600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:15798000-15803400	Weak transcription	Placenta	Placenta
4	chr11:15801200-15803000	Enhancers	Fetal Stomach	stomach
5	chr11:15801200-15803400	Enhancers	Fetal Muscle Leg	muscle
6	chr11:15801400-15802600	Enhancers	Aorta	Aorta
7	chr11:15801400-15803800	Enhancers	Fetal Lung	lung
8	chr11:15802000-15804400	Enhancers	Ovary	ovary
9	chr11:15802200-15802600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:15802200-15803000	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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