Variant report

Variant	rs12278006
Chromosome Location	chr11:26263309-26263310
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11029425	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11029440	1.00[AMR][1000 genomes]
rs12277400	1.00[AMR][1000 genomes]
rs12279570	1.00[AMR][1000 genomes]
rs12280217	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12281738	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283141	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287081	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26256600-26265200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:26256800-26265000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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