Variant report

Variant	rs12279570
Chromosome Location	chr11:26269578-26269579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11029425	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11029440	1.00[AMR][1000 genomes]
rs12277400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12278006	1.00[AMR][1000 genomes]
rs12280217	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12281738	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283141	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287081	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26267200-26275200	Weak transcription	NHLF	lung
2	chr11:26268400-26274600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:26268600-26269600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:26269000-26272200	Weak transcription	NHDF-Ad	bronchial
5	chr11:26269200-26270000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:26269400-26270400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links