Variant report

Variant	rs12280217
Chromosome Location	chr11:26264771-26264772
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11029425	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11029440	1.00[AMR][1000 genomes]
rs12277400	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12278006	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12279570	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12281738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283141	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287081	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26256600-26265200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:26256800-26265000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:26263800-26264800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:26264600-26265800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:26264600-26265800	Enhancers	Colon Smooth Muscle	Colon
6	chr11:26264600-26269000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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