Variant report

Variant	rs12278400
Chromosome Location	chr11:26046964-26046965
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10501034	0.82[EUR][1000 genomes]
rs10501035	0.81[EUR][1000 genomes]
rs10734366	0.91[CEU][hapmap]
rs10742127	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs10742128	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs10767499	0.93[EUR][1000 genomes]
rs10767500	0.91[EUR][1000 genomes]
rs10767501	0.82[EUR][1000 genomes]
rs10834896	0.92[EUR][1000 genomes]
rs10834897	0.92[CEU][hapmap]
rs10834898	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs11029100	0.93[EUR][1000 genomes]
rs12278353	0.81[AFR][1000 genomes]
rs1387503	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs1387505	0.81[EUR][1000 genomes]
rs1387507	0.91[CEU][hapmap]
rs17242935	0.82[EUR][1000 genomes]
rs17242942	0.82[EUR][1000 genomes]
rs1948211	0.92[EUR][1000 genomes]
rs2035732	0.92[EUR][1000 genomes]
rs2035733	0.92[EUR][1000 genomes]
rs2130232	0.81[EUR][1000 genomes]
rs2130234	0.81[EUR][1000 genomes]
rs2171733	0.81[EUR][1000 genomes]
rs2171734	0.81[EUR][1000 genomes]
rs2349794	0.81[EUR][1000 genomes]
rs4075765	0.83[CEU][hapmap]
rs4104018	0.92[EUR][1000 genomes]
rs4328171	0.81[EUR][1000 genomes]
rs4336988	0.81[EUR][1000 genomes]
rs4353231	0.81[EUR][1000 genomes]
rs4359162	0.81[EUR][1000 genomes]
rs4363548	0.92[EUR][1000 genomes]
rs4469842	0.90[EUR][1000 genomes]
rs4515923	0.81[EUR][1000 genomes]
rs4536165	0.81[EUR][1000 genomes]
rs4536166	0.81[EUR][1000 genomes]
rs4575221	0.91[EUR][1000 genomes]
rs4587687	0.81[EUR][1000 genomes]
rs4923333	0.82[EUR][1000 genomes]
rs6484193	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs7101817	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs7105188	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs7105339	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs7115939	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs7116083	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs7119696	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs7120325	0.92[EUR][1000 genomes]
rs7123678	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs7924859	0.88[EUR][1000 genomes]
rs7926366	0.81[EUR][1000 genomes]
rs7929362	0.81[EUR][1000 genomes]
rs7929524	0.81[EUR][1000 genomes]
rs7938835	0.92[EUR][1000 genomes]
rs7949618	0.81[EUR][1000 genomes]
rs7950045	0.81[EUR][1000 genomes]
rs983509	0.81[EUR][1000 genomes]
rs988513	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs988514	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs988515	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs988516	0.92[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1041778	chr11:25898574-26098141	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26036800-26047000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr11:26042800-26049800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:26043000-26047000	Weak transcription	NHEK	skin
4	chr11:26043400-26047000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:26046600-26051200	Enhancers	Hela-S3	cervix

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