Variant report

Variant	rs17242942
Chromosome Location	chr11:26050326-26050327
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12278400	0.82[EUR][1000 genomes]
rs17242935	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2349795	0.91[EUR][1000 genomes]
rs4075765	0.81[CEU][hapmap]
rs72880391	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72882161	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1041778	chr11:25898574-26098141	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26046600-26051200	Enhancers	Hela-S3	cervix
2	chr11:26049400-26050600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:26049600-26050400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:26049800-26050400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr11:26049800-26050400	Enhancers	GM12878-XiMat	blood
6	chr11:26049800-26050400	Enhancers	NHDF-Ad	bronchial
7	chr11:26049800-26050600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr11:26050200-26051400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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