Variant report

Variant	rs1227867
Chromosome Location	chr19:37287405-37287406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10410980	0.97[EUR][1000 genomes]
rs10420413	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1148384	0.84[ASN][1000 genomes]
rs1148387	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1148393	0.81[EUR][1000 genomes]
rs1148400	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1148401	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1227560	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1227796	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1227797	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1227800	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1227802	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1227803	0.84[ASN][1000 genomes]
rs1227805	0.84[ASN][1000 genomes]
rs1227806	0.84[ASN][1000 genomes]
rs1227809	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1227811	0.81[EUR][1000 genomes]
rs1227812	0.81[EUR][1000 genomes]
rs1227818	0.81[EUR][1000 genomes]
rs1227824	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1227826	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1227863	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1227864	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1227865	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12982205	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1302670	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1726703	0.85[ASN][1000 genomes]
rs1726717	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2245366	0.83[EUR][1000 genomes]
rs2445877	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2445878	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2695086	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28372636	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35127048	0.83[EUR][1000 genomes]
rs35265584	0.81[EUR][1000 genomes]
rs35313661	0.81[EUR][1000 genomes]
rs35967992	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3745775	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4806351	0.83[EUR][1000 genomes]
rs4806353	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4806365	0.81[EUR][1000 genomes]
rs542847	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57193089	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58381108	0.81[EUR][1000 genomes]
rs62114321	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62114322	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73037149	0.81[EUR][1000 genomes]
rs8106994	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv469794	chr19:37129858-37310257	Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv482392	chr19:37129858-37310257	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	esv34384	chr19:37134068-37330613	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
9	nsv817833	chr19:37146694-37357289	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
10	esv3517005	chr19:37193712-37364110	Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
11	esv3517004	chr19:37193762-37363960	ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
12	esv3517006	chr19:37193762-37363960	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
13	nsv911650	chr19:37241141-37331614	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
14	nsv521605	chr19:37261810-37483444	ZNF genes & repeats Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
15	nsv963042	chr19:37271305-37296858	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
16	nsv1060155	chr19:37274915-37458788	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
17	nsv544000	chr19:37274915-37458788	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
18	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
19	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37282600-37287800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr19:37283000-37287600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr19:37285400-37287800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
4	chr19:37285800-37287600	Weak transcription	Fetal Lung	lung
5	chr19:37286200-37288000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr19:37286400-37289200	Active TSS	Placenta	Placenta
7	chr19:37286600-37288200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr19:37287000-37288000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
9	chr19:37287200-37287600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr19:37287200-37287600	ZNF genes & repeats	Fetal Intestine Large	intestine
11	chr19:37287200-37287600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
12	chr19:37287200-37287800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr19:37287200-37287800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr19:37287200-37288000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
15	chr19:37287200-37288800	Active TSS	Primary T cells from cord blood	blood
16	chr19:37287200-37289000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
17	chr19:37287200-37289000	Active TSS	Brain Cingulate Gyrus	brain
18	chr19:37287200-37289200	Active TSS	H9 Cell Line	embryonic stem cell
19	chr19:37287200-37289200	Active TSS	Duodenum Smooth Muscle	Duodenum
20	chr19:37287400-37287600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
21	chr19:37287400-37287600	Active TSS	Primary hematopoietic stem cells	blood
22	chr19:37287400-37287600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr19:37287400-37287600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr19:37287400-37287600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr19:37287400-37287600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr19:37287400-37287600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
27	chr19:37287400-37287600	Enhancers	Fetal Muscle Leg	muscle
28	chr19:37287400-37287600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
29	chr19:37287400-37287600	Enhancers	Left Ventricle	heart
30	chr19:37287400-37287600	Enhancers	Right Ventricle	heart
31	chr19:37287400-37287800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
32	chr19:37287400-37288000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr19:37287400-37288000	Flanking Active TSS	Primary B cells from peripheral blood	blood
34	chr19:37287400-37288000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
35	chr19:37287400-37288000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
36	chr19:37287400-37288400	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
37	chr19:37287400-37288600	Active TSS	Primary T helper cells fromperipheralblood	blood
38	chr19:37287400-37288600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
39	chr19:37287400-37288800	ZNF genes & repeats	Adipose Nuclei	Adipose
40	chr19:37287400-37289000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr19:37287400-37289000	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
42	chr19:37287400-37289000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
43	chr19:37287400-37289000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr19:37287400-37289000	Active TSS	Rectal Smooth Muscle	rectum
45	chr19:37287400-37289200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr19:37287400-37289200	Active TSS	Brain Hippocampus Middle	brain
47	chr19:37287400-37289200	Active TSS	Fetal Kidney	kidney
48	chr19:37287400-37289200	Active TSS	Ovary	ovary
49	chr19:37287400-37289200	Active TSS	Right Atrium	heart
50	chr19:37287400-37289200	Active TSS	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links