Variant report

Variant	rs12278947
Chromosome Location	chr11:101577530-101577531
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11224971	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11224980	0.96[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11224981	0.93[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12270263	0.92[ASN][1000 genomes]
rs12271790	0.92[ASN][1000 genomes]
rs12273006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12274640	0.92[ASN][1000 genomes]
rs12275495	0.96[AFR][1000 genomes]
rs12279049	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12282424	0.96[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12283513	0.92[ASN][1000 genomes]
rs12285105	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12288139	0.96[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12288874	0.92[ASN][1000 genomes]
rs12289778	0.88[ASN][1000 genomes]
rs12289931	0.92[ASN][1000 genomes]
rs12292679	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12292681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17097034	0.85[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs57091433	0.95[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs59152435	0.92[ASN][1000 genomes]
rs60185950	0.92[ASN][1000 genomes]
rs6590912	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6590913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6590914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6590915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7103795	0.92[ASN][1000 genomes]
rs7105287	0.93[AFR][1000 genomes]
rs7106033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7107036	0.92[ASN][1000 genomes]
rs7118524	0.92[ASN][1000 genomes]
rs7121103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7122060	0.92[ASN][1000 genomes]
rs7125654	0.92[ASN][1000 genomes]
rs73588290	0.92[ASN][1000 genomes]
rs73590245	0.93[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs73590248	0.97[AFR][1000 genomes]
rs73590249	0.98[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs73590250	0.94[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7950896	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv530645	chr11:101451416-101778666	Bivalent/Poised TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv461	chr11:101534107-101584004	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv468853	chr11:101539408-101616696	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv556139	chr11:101539408-101616696	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv469987	chr11:101547723-101610380	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv74	chr11:101560540-101608664	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv898332	chr11:101562004-101732566	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv832249	chr11:101571819-101749073	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101564800-101578400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:101575200-101578800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr11:101575800-101577600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:101576200-101578400	Weak transcription	Esophagus	oesophagus
5	chr11:101576200-101578600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:101576600-101577600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr11:101576600-101577800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr11:101576800-101577800	Enhancers	NHLF	lung
9	chr11:101576800-101578000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr11:101576800-101578000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr11:101576800-101578200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr11:101576800-101578200	Enhancers	NH-A	brain
13	chr11:101577000-101578200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:101577000-101578400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:101577000-101579600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr11:101577400-101577800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:101577400-101577800	Flanking Active TSS	A549	lung
18	chr11:101577400-101578400	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links