Variant report

Variant	rs12279049
Chromosome Location	chr11:101575449-101575450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11224971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11224980	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11224981	0.92[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12270263	0.92[ASN][1000 genomes]
rs12271790	0.92[ASN][1000 genomes]
rs12273006	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12274640	0.92[ASN][1000 genomes]
rs12275495	0.94[AFR][1000 genomes]
rs12278947	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12282424	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12283513	0.92[ASN][1000 genomes]
rs12285105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12288139	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12288874	0.92[ASN][1000 genomes]
rs12289778	0.88[ASN][1000 genomes]
rs12289931	0.92[ASN][1000 genomes]
rs12292679	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12292681	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17097034	0.92[ASN][1000 genomes]
rs57091433	0.94[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs59152435	0.92[ASN][1000 genomes]
rs60185950	0.92[ASN][1000 genomes]
rs6590912	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6590913	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6590914	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6590915	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7103795	0.92[ASN][1000 genomes]
rs7105287	0.92[AFR][1000 genomes]
rs7106033	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7107036	0.92[ASN][1000 genomes]
rs7118524	0.92[ASN][1000 genomes]
rs7121103	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7122060	0.92[ASN][1000 genomes]
rs7125654	0.92[ASN][1000 genomes]
rs73588290	0.92[ASN][1000 genomes]
rs73590245	0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs73590248	0.95[AFR][1000 genomes]
rs73590249	0.97[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs73590250	0.93[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7950896	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv530645	chr11:101451416-101778666	Bivalent/Poised TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv461	chr11:101534107-101584004	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv468853	chr11:101539408-101616696	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv556139	chr11:101539408-101616696	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv469987	chr11:101547723-101610380	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv74	chr11:101560540-101608664	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv898332	chr11:101562004-101732566	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv1004091	chr11:101564497-101576385	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
12	esv3525005	chr11:101565272-101576270	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
13	esv3333748	chr11:101565416-101576117	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
14	esv3369553	chr11:101565456-101575479	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
15	nsv832249	chr11:101571819-101749073	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101564800-101578400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:101575200-101575600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr11:101575200-101575800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr11:101575200-101578800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr11:101575400-101575600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr11:101575400-101576200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr11:101575400-101576600	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links