Variant report

Variant	rs12278957
Chromosome Location	chr11:76025679-76025680
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76018771..76021180-chr11:76023775..76026508,2	MCF-7	breast:
2	chr11:76025405..76027275-chr11:76028551..76031168,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11236703	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12269832	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12282522	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12288800	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12295401	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12799870	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60597244	0.98[ASN][1000 genomes]
rs7101871	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7131150	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897930	chr11:75960472-76027936	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76020400-76026200	Enhancers	Fetal Lung	lung
2	chr11:76024400-76027000	Enhancers	Placenta Amnion	Placenta Amnion
3	chr11:76024600-76025800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:76024600-76025800	Enhancers	Placenta	Placenta
5	chr11:76024800-76025800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
6	chr11:76024800-76025800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:76024800-76025800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr11:76024800-76026000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:76024800-76026000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr11:76024800-76026000	Bivalent Enhancer	Fetal Muscle Leg	muscle
11	chr11:76024800-76026800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:76025000-76025800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:76025000-76025800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
14	chr11:76025000-76025800	Bivalent Enhancer	HSMMtube	muscle
15	chr11:76025000-76026600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr11:76025000-76026800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:76025000-76027000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:76025000-76027000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:76025200-76026000	Enhancers	Adipose Nuclei	Adipose
20	chr11:76025200-76026000	Enhancers	NHDF-Ad	bronchial
21	chr11:76025200-76026400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:76025200-76026400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr11:76025200-76026800	Enhancers	HMEC	breast
24	chr11:76025200-76026800	Enhancers	NHEK	skin
25	chr11:76025400-76026400	Enhancers	NH-A	brain
26	chr11:76025400-76026600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr11:76025400-76027000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr11:76025400-76029800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr11:76025600-76026400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin

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