Variant report

Variant	rs7101871
Chromosome Location	chr11:76024429-76024430
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11236703	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236704	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12269832	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12278957	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12282522	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12288800	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12295401	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12799870	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60597244	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7131150	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897930	chr11:75960472-76027936	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76019600-76025000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:76019800-76024800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:76019800-76024800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:76020400-76026200	Enhancers	Fetal Lung	lung
5	chr11:76022400-76024800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:76022400-76025200	Weak transcription	Adipose Nuclei	Adipose
7	chr11:76023000-76025200	Weak transcription	Fetal Brain Female	brain
8	chr11:76023800-76025400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr11:76024000-76025400	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr11:76024400-76025400	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr11:76024400-76027000	Enhancers	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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