Variant report

Variant	rs12295401
Chromosome Location	chr11:76032079-76032080
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11236703	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236704	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12269832	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12278957	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12282522	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12288800	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12799870	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60597244	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7101871	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7131150	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv989053	chr11:76027846-76039082	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76027000-76032800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:76028800-76033400	Weak transcription	Hela-S3	cervix
3	chr11:76029800-76032200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:76031400-76032800	Weak transcription	Placenta	Placenta
5	chr11:76031600-76032800	Weak transcription	Right Ventricle	heart
6	chr11:76031800-76032200	Active TSS	Pancreas	Pancrea
7	chr11:76032000-76032200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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