Variant report

Variant	rs12279309
Chromosome Location	chr11:26010768-26010769
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1025835	0.89[ASN][1000 genomes]
rs10501029	0.82[ASN][1000 genomes]
rs10501031	0.96[ASN][1000 genomes]
rs11029049	0.89[ASN][1000 genomes]
rs11029053	1.00[ASN][1000 genomes]
rs11029054	1.00[ASN][1000 genomes]
rs11029055	1.00[ASN][1000 genomes]
rs11029058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029061	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11029063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12270523	0.82[ASN][1000 genomes]
rs12271587	1.00[ASN][1000 genomes]
rs12272161	1.00[ASN][1000 genomes]
rs12273324	1.00[ASN][1000 genomes]
rs12273504	1.00[ASN][1000 genomes]
rs12273555	0.89[ASN][1000 genomes]
rs12273620	1.00[ASN][1000 genomes]
rs12273640	1.00[ASN][1000 genomes]
rs12273759	1.00[ASN][1000 genomes]
rs12273808	1.00[ASN][1000 genomes]
rs12274263	1.00[ASN][1000 genomes]
rs12275369	0.82[ASN][1000 genomes]
rs12275747	1.00[ASN][1000 genomes]
rs12277460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12279540	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12280607	0.89[ASN][1000 genomes]
rs12280831	1.00[ASN][1000 genomes]
rs12281204	1.00[ASN][1000 genomes]
rs12284543	1.00[ASN][1000 genomes]
rs12286887	1.00[ASN][1000 genomes]
rs12287905	0.89[ASN][1000 genomes]
rs12289013	0.96[ASN][1000 genomes]
rs12289848	0.82[ASN][1000 genomes]
rs12290504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12292996	0.82[ASN][1000 genomes]
rs12293071	0.82[ASN][1000 genomes]
rs12293233	0.82[ASN][1000 genomes]
rs12294235	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1348165	0.82[ASN][1000 genomes]
rs1352567	1.00[ASN][1000 genomes]
rs1441492	0.82[ASN][1000 genomes]
rs1441508	0.89[ASN][1000 genomes]
rs1489515	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1489516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1489517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16915021	0.96[ASN][1000 genomes]
rs2008347	0.89[ASN][1000 genomes]
rs2012510	1.00[ASN][1000 genomes]
rs4086865	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4086867	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56374149	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56895836	1.00[ASN][1000 genomes]
rs57197050	1.00[ASN][1000 genomes]
rs57969155	1.00[ASN][1000 genomes]
rs58165900	0.82[ASN][1000 genomes]
rs60147714	0.82[ASN][1000 genomes]
rs60412021	1.00[ASN][1000 genomes]
rs7104747	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7118878	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs984396	1.00[ASN][1000 genomes]
rs985289	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs985290	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv469948	chr11:25859783-26026233	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1041778	chr11:25898574-26098141	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26008200-26011600	Weak transcription	Hela-S3	cervix
2	chr11:26009800-26011600	Weak transcription	Fetal Lung	lung
3	chr11:26010000-26013400	Weak transcription	Fetal Brain Male	brain
4	chr11:26010200-26014000	Weak transcription	Adipose Nuclei	Adipose

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