Variant report
| Variant | rs56374149 |
|---|---|
| Chromosome Location | chr11:26015899-26015900 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs11029058 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11029059 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11029060 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11029061 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11029062 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11029063 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11029065 | 1.00[ASN][1000 genomes] |
| rs12274928 | 1.00[ASN][1000 genomes] |
| rs12277460 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12277478 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12279309 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12288238 | 1.00[ASN][1000 genomes] |
| rs12288618 | 1.00[ASN][1000 genomes] |
| rs12288722 | 1.00[ASN][1000 genomes] |
| rs12288725 | 1.00[ASN][1000 genomes] |
| rs12290504 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12294235 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs1489515 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1489516 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1489517 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4086865 | 0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4086867 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7104747 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7118878 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs985289 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs985290 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2760599 | chr11:25186984-26159450 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1046507 | chr11:25469712-26111707 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv469948 | chr11:25859783-26026233 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1041778 | chr11:25898574-26098141 | Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:26014400-26017000 | Weak transcription | Fetal Heart | heart |
| 2 | chr11:26015400-26016800 | Weak transcription | Fetal Lung | lung |
