Variant report

Variant	rs12288722
Chromosome Location	chr11:26015975-26015976
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1025835	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10501029	0.88[AMR][1000 genomes]
rs10501031	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11029049	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11029053	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11029054	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11029055	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11029065	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12271587	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12272161	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12273324	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12273504	1.00[EUR][1000 genomes]
rs12273620	1.00[EUR][1000 genomes]
rs12273640	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12273759	1.00[EUR][1000 genomes]
rs12273808	1.00[EUR][1000 genomes]
rs12274263	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12274928	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12275369	0.82[AMR][1000 genomes]
rs12275747	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12279540	1.00[EUR][1000 genomes]
rs12280831	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12281204	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12284543	1.00[EUR][1000 genomes]
rs12286887	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12287905	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12288238	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12288618	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12288725	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12289013	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12289848	0.88[AMR][1000 genomes]
rs12292996	0.88[AMR][1000 genomes]
rs12293071	0.88[AMR][1000 genomes]
rs12293233	0.88[AMR][1000 genomes]
rs1352567	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1441508	1.00[EUR][1000 genomes]
rs16915021	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2012510	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4086865	1.00[ASN][1000 genomes]
rs4086867	1.00[ASN][1000 genomes]
rs56374149	1.00[ASN][1000 genomes]
rs56895836	1.00[EUR][1000 genomes]
rs57197050	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57969155	1.00[EUR][1000 genomes]
rs58165900	0.88[AMR][1000 genomes]
rs60147714	0.82[AMR][1000 genomes]
rs60412021	1.00[EUR][1000 genomes]
rs7104747	0.90[AFR][1000 genomes]
rs7118878	0.90[AFR][1000 genomes]
rs984396	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv469948	chr11:25859783-26026233	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1041778	chr11:25898574-26098141	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26014400-26017000	Weak transcription	Fetal Heart	heart
2	chr11:26015400-26016800	Weak transcription	Fetal Lung	lung

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