Variant report

Variant	rs12288238
Chromosome Location	chr11:26015133-26015134
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1025835	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10501029	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10501031	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11029049	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11029053	0.93[AMR][1000 genomes]
rs11029054	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11029055	0.87[AMR][1000 genomes]
rs11029065	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271587	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12272161	0.93[AMR][1000 genomes]
rs12273324	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12273640	0.87[AMR][1000 genomes]
rs12274263	0.93[AMR][1000 genomes]
rs12274928	1.00[ASN][1000 genomes]
rs12275369	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12275747	0.93[AMR][1000 genomes]
rs12280831	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12281204	0.93[AMR][1000 genomes]
rs12286887	0.93[AMR][1000 genomes]
rs12287905	0.87[AMR][1000 genomes]
rs12288618	1.00[ASN][1000 genomes]
rs12288722	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12288725	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12289013	0.94[AMR][1000 genomes]
rs12289848	0.93[AMR][1000 genomes]
rs12292996	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12293071	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12293233	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs1348165	0.82[AMR][1000 genomes]
rs1441492	0.82[AMR][1000 genomes]
rs1441508	0.82[AMR][1000 genomes]
rs16915021	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs2012510	0.93[AMR][1000 genomes]
rs4086865	1.00[ASN][1000 genomes]
rs4086867	1.00[ASN][1000 genomes]
rs56374149	1.00[ASN][1000 genomes]
rs57197050	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs58165900	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs60147714	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv469948	chr11:25859783-26026233	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1041778	chr11:25898574-26098141	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26013200-26015400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr11:26013400-26015400	Enhancers	Fetal Brain Male	brain
3	chr11:26013800-26015200	Enhancers	Brain Germinal Matrix	brain
4	chr11:26013800-26015400	Enhancers	Fetal Brain Female	brain
5	chr11:26014400-26015400	Enhancers	Fetal Lung	lung
6	chr11:26014400-26017000	Weak transcription	Fetal Heart	heart

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