Variant report

Variant	rs12292996
Chromosome Location	chr11:25968571-25968572
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1025835	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10501029	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10501031	0.93[AMR][1000 genomes]
rs11029049	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11029053	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11029054	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11029055	0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11029058	0.82[ASN][1000 genomes]
rs11029059	0.82[ASN][1000 genomes]
rs11029060	0.82[ASN][1000 genomes]
rs11029061	0.82[ASN][1000 genomes]
rs11029063	0.82[ASN][1000 genomes]
rs11029065	0.88[AMR][1000 genomes]
rs12270326	0.85[AFR][1000 genomes]
rs12270523	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271587	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12272161	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12273324	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12273504	0.82[ASN][1000 genomes]
rs12273555	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12273620	0.82[ASN][1000 genomes]
rs12273640	0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12273759	0.82[ASN][1000 genomes]
rs12273808	0.82[ASN][1000 genomes]
rs12274263	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12275369	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12275747	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12275759	0.85[AFR][1000 genomes]
rs12277460	0.82[ASN][1000 genomes]
rs12277478	0.82[ASN][1000 genomes]
rs12279309	0.82[ASN][1000 genomes]
rs12279540	0.82[ASN][1000 genomes]
rs12280607	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12280831	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12281204	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12284543	0.82[ASN][1000 genomes]
rs12285259	0.85[AFR][1000 genomes]
rs12285295	0.85[AFR][1000 genomes]
rs12286887	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12287905	0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12288238	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12288722	0.88[AMR][1000 genomes]
rs12288725	0.88[AMR][1000 genomes]
rs12289013	0.88[AMR][1000 genomes]
rs12289848	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12290504	0.82[ASN][1000 genomes]
rs12293071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12293233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294235	0.82[ASN][1000 genomes]
rs1348165	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1352567	0.82[ASN][1000 genomes]
rs1441485	0.96[ASN][1000 genomes]
rs1441492	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1441508	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1489515	0.82[ASN][1000 genomes]
rs1489516	0.82[ASN][1000 genomes]
rs1489517	0.82[ASN][1000 genomes]
rs16915021	0.88[AMR][1000 genomes]
rs2008347	0.93[ASN][1000 genomes]
rs2012510	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4923323	0.96[ASN][1000 genomes]
rs56895836	0.82[ASN][1000 genomes]
rs57197050	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs57969155	0.82[ASN][1000 genomes]
rs58165900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60147714	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60412021	0.82[ASN][1000 genomes]
rs984396	0.82[ASN][1000 genomes]
rs985289	0.82[ASN][1000 genomes]
rs985290	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv832091	chr11:25823826-26009887	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv469948	chr11:25859783-26026233	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1041778	chr11:25898574-26098141	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv897140	chr11:25905509-25991194	Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv467776	chr11:25951319-25979162	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
8	nsv553897	chr11:25951319-25979162	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	n/a	n/a	inside rSNPs	diseases
9	nsv467777	chr11:25959082-25985507	Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
10	nsv553898	chr11:25959082-25985507	Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
11	esv3348528	chr11:25964425-25982438	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:25961000-25972800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:25961600-25972800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:25963200-25979200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:25966200-25974000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:25968000-25968800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr11:25968200-25968600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr11:25968200-25968800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr11:25968200-25968800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr11:25968400-25968800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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