Variant report

Variant	rs12279547
Chromosome Location	chr11:120168514-120168515
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1043467	1.00[EUR][1000 genomes]
rs11217836	1.00[EUR][1000 genomes]
rs12270828	1.00[EUR][1000 genomes]
rs12279552	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12287078	1.00[EUR][1000 genomes]
rs12288721	1.00[EUR][1000 genomes]
rs34217050	1.00[EUR][1000 genomes]
rs35985298	1.00[EUR][1000 genomes]
rs59801719	1.00[EUR][1000 genomes]
rs59982630	1.00[EUR][1000 genomes]
rs60676831	1.00[EUR][1000 genomes]
rs73584172	1.00[EUR][1000 genomes]
rs73584179	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120166600-120170200	Weak transcription	Hela-S3	cervix
2	chr11:120166800-120170400	Weak transcription	Fetal Intestine Small	intestine
3	chr11:120167000-120170400	Weak transcription	Fetal Intestine Large	intestine
4	chr11:120167800-120169400	Enhancers	NHEK	skin
5	chr11:120167800-120170800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:120168000-120169600	Enhancers	Pancreas	Pancrea
7	chr11:120168400-120170000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:120168400-120170000	Weak transcription	HMEC	breast
9	chr11:120168400-120170200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr11:120168400-120170200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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