Variant report

Variant	rs60676831
Chromosome Location	chr11:120151462-120151463
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:120126805..120129444-chr11:120151052..120153033,2	MCF-7	breast:
2	chr11:120130830..120132794-chr11:120150514..120152868,2	K562	blood:
3	chr11:120145243..120148193-chr11:120148457..120151899,3	MCF-7	breast:
4	chr11:120151169..120153171-chr11:120166306..120168232,2	K562	blood:
5	chr11:120149912..120152911-chr11:120168871..120171487,3	K562	blood:
6	chr11:120107145..120109264-chr11:120149713..120151614,2	MCF-7	breast:
7	chr11:120141543..120143317-chr11:120150505..120153667,3	K562	blood:
8	chr11:120105904..120109719-chr11:120147377..120154019,10	K562	blood:
9	chr11:120144746..120147673-chr11:120150334..120152904,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000137709	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1043467	1.00[EUR][1000 genomes]
rs11217836	1.00[EUR][1000 genomes]
rs12270828	1.00[EUR][1000 genomes]
rs12279547	1.00[EUR][1000 genomes]
rs12279552	1.00[EUR][1000 genomes]
rs12287078	1.00[EUR][1000 genomes]
rs12288721	1.00[EUR][1000 genomes]
rs34217050	1.00[EUR][1000 genomes]
rs35985298	1.00[EUR][1000 genomes]
rs59801719	1.00[EUR][1000 genomes]
rs59982630	1.00[EUR][1000 genomes]
rs73584172	1.00[EUR][1000 genomes]
rs73584179	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv428581	chr11:120006048-120167603	Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120137400-120152200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:120147200-120151600	Weak transcription	Lung	lung
3	chr11:120149200-120152800	Enhancers	Hela-S3	cervix
4	chr11:120150000-120153000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr11:120150200-120152600	Enhancers	NHEK	skin
6	chr11:120150200-120154200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:120150400-120152400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr11:120150400-120152800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:120150400-120153000	Enhancers	Fetal Heart	heart
10	chr11:120150600-120152600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:120150600-120152600	Enhancers	Placenta	Placenta
12	chr11:120151000-120151600	Enhancers	K562	blood
13	chr11:120151000-120152600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:120151200-120152400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:120151400-120151600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:120151400-120151600	Enhancers	Esophagus	oesophagus
17	chr11:120151400-120151800	Enhancers	Right Ventricle	heart
18	chr11:120151400-120151800	Flanking Active TSS	HepG2	liver
19	chr11:120151400-120152200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr11:120151400-120152200	Enhancers	Fetal Muscle Trunk	muscle
21	chr11:120151400-120152400	Enhancers	Fetal Stomach	stomach
22	chr11:120151400-120152400	Enhancers	Placenta Amnion	Placenta Amnion
23	chr11:120151400-120152600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr11:120151400-120152600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:120151400-120152600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:120151400-120152600	Enhancers	Left Ventricle	heart
27	chr11:120151400-120152600	Enhancers	Stomach Smooth Muscle	stomach
28	chr11:120151400-120152800	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr11:120151400-120153000	Enhancers	Right Atrium	heart

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