Variant report

Variant	rs12282965
Chromosome Location	chr11:94261514-94261515
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:94261421..94263966-chr11:94276569..94279917,3	MCF-7	breast:
2	chr11:94260267..94263157-chr11:94276401..94278483,2	K562	blood:
3	chr11:94260267..94262200-chr11:94276599..94278483,2	K562	blood:

Variant related genes	Relation type
ENSG00000196371	Chromatin interaction
ENSG00000134627	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11020812	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11020815	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11020821	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12286498	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12294732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12576083	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16912567	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16924599	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16924603	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16924610	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34185869	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34288874	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34838015	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56365771	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72963805	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72963816	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72963821	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72963823	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72980453	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72980480	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7931179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7934178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7934183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7934286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7945897	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94246000-94267400	Weak transcription	Aorta	Aorta
2	chr11:94254400-94261800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:94257400-94262400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:94259000-94262600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:94259200-94265400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr11:94259600-94266600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:94260200-94261600	Weak transcription	HMEC	breast
8	chr11:94260200-94268800	Weak transcription	Fetal Intestine Small	intestine
9	chr11:94260400-94261600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr11:94260600-94261800	Weak transcription	NHEK	skin
11	chr11:94260600-94269400	Weak transcription	Osteobl	bone
12	chr11:94260800-94261800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr11:94261200-94261600	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links