Variant report

Variant	rs16924603
Chromosome Location	chr11:94255259-94255260
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:94253806..94255859-chr11:94267409..94270177,3	K562	blood:
2	chr11:94252606..94260040-chr11:94275780..94279036,7	MCF-7	breast:
3	chr11:94254819..94255534-chr11:94330825..94331723,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196371	Chromatin interaction
ENSG00000134627	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11020812	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11020815	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11020821	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12282965	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12286498	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12294732	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12574292	0.81[CHB][hapmap]
rs12576083	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16912567	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16924599	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16924610	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34185869	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34288874	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34838015	0.86[ASN][1000 genomes]
rs56365771	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72963805	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72963816	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72963821	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72963823	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72980453	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72980480	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7931179	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7934178	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7934183	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7934286	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7945897	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs16924603	AMOTL1	cis	parietal	SCAN
rs16924603	MRE11A	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94246000-94267400	Weak transcription	Aorta	Aorta
2	chr11:94246800-94259000	Weak transcription	Stomach Mucosa	stomach
3	chr11:94247200-94258800	Weak transcription	Fetal Intestine Small	intestine
4	chr11:94253200-94257000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:94253400-94258800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr11:94253600-94258800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr11:94254400-94261800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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