Variant report

Variant	rs16912567
Chromosome Location	chr11:94270005-94270006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:94268238..94270129-chr11:94275344..94277340,2	MCF-7	breast:
2	chr11:94253806..94255859-chr11:94267409..94270177,3	K562	blood:
3	chr11:94268858..94270975-chr11:94276312..94278364,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000134627	Chromatin interaction
ENSG00000196371	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10765688	0.83[ASN][1000 genomes]
rs10831242	0.83[ASN][1000 genomes]
rs11020812	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11020815	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11020821	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11020833	0.84[ASN][1000 genomes]
rs11020834	0.84[ASN][1000 genomes]
rs11020835	0.83[ASN][1000 genomes]
rs11020836	0.83[ASN][1000 genomes]
rs11020837	0.83[ASN][1000 genomes]
rs11020840	0.82[ASN][1000 genomes]
rs11020847	0.82[ASN][1000 genomes]
rs12282965	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12286498	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12294732	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12574292	0.82[ASN][1000 genomes]
rs12576083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16924599	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16924603	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16924610	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1939139	0.83[ASN][1000 genomes]
rs2155098	0.81[ASN][1000 genomes]
rs2186624	0.82[ASN][1000 genomes]
rs2212361	0.81[ASN][1000 genomes]
rs34185869	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34288874	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34838015	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56365771	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72963805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72963816	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72963821	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72963823	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72963846	0.83[ASN][1000 genomes]
rs72963850	0.81[ASN][1000 genomes]
rs72963868	0.82[ASN][1000 genomes]
rs72980453	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72980480	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7342170	0.81[ASN][1000 genomes]
rs7931179	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7934178	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7934183	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7934286	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7945897	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94266400-94271200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:94267600-94270200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:94267600-94270400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:94267600-94276200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr11:94267600-94276400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr11:94267800-94270200	Weak transcription	Fetal Lung	lung
7	chr11:94267800-94270200	Weak transcription	Right Atrium	heart
8	chr11:94268000-94270200	Weak transcription	Adipose Nuclei	Adipose
9	chr11:94268000-94270600	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr11:94268600-94271200	Enhancers	Stomach Mucosa	stomach
11	chr11:94268800-94271400	Enhancers	Fetal Intestine Small	intestine
12	chr11:94268800-94273400	Enhancers	Fetal Intestine Large	intestine
13	chr11:94268800-94273800	Enhancers	Duodenum Mucosa	Duodenum
14	chr11:94269200-94270200	Weak transcription	Small Intestine	intestine
15	chr11:94269400-94270200	Enhancers	Osteobl	bone
16	chr11:94269400-94271000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:94269400-94271200	Enhancers	Muscle Satellite Cultured Cells	--
18	chr11:94269600-94270400	Enhancers	Aorta	Aorta
19	chr11:94269600-94271000	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr11:94269600-94271200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:94269800-94270800	Weak transcription	HSMMtube	muscle
22	chr11:94269800-94271200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr11:94270000-94270400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:94270000-94270400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
25	chr11:94270000-94270800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr11:94270000-94271200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr11:94270000-94271200	Enhancers	HMEC	breast
28	chr11:94270000-94271200	Enhancers	HSMM	muscle

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