Variant report

Variant	rs11020847
Chromosome Location	chr11:94323912-94323913
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94279412..94282281-chr11:94323849..94325734,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10765688	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10831242	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11020815	0.81[ASN][1000 genomes]
rs11020821	0.81[ASN][1000 genomes]
rs11020833	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11020834	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11020835	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11020836	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11020837	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11020840	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020845	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11020846	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11824838	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12574292	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12576083	0.82[ASN][1000 genomes]
rs16912567	0.82[ASN][1000 genomes]
rs1939139	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2155098	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2186624	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2212361	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57607909	0.88[ASN][1000 genomes]
rs7107559	0.88[CEU][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes]
rs7110811	0.92[EUR][1000 genomes]
rs7111719	0.86[CEU][hapmap];0.92[EUR][1000 genomes]
rs7120587	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs7126782	0.88[CEU][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes]
rs72963816	0.82[ASN][1000 genomes]
rs72963821	0.82[ASN][1000 genomes]
rs72963823	0.82[ASN][1000 genomes]
rs72963846	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72963850	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72963868	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7342170	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11020847	MRE11A	cis	multi-tissue	Pritchard
rs11020847	MRE11A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94296600-94344800	Weak transcription	Left Ventricle	heart
2	chr11:94303000-94325400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:94307600-94324000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:94308200-94342800	Weak transcription	K562	blood
5	chr11:94308600-94335400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:94309200-94342600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr11:94312800-94325200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:94313800-94324000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr11:94315200-94326000	Weak transcription	Brain Angular Gyrus	brain
10	chr11:94316200-94328400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr11:94317600-94333600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:94317600-94335800	Weak transcription	Primary B cells from cord blood	blood
13	chr11:94317600-94335800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:94317600-94336200	Weak transcription	Esophagus	oesophagus
15	chr11:94318000-94335800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:94318400-94328000	Weak transcription	GM12878-XiMat	blood
17	chr11:94319200-94324600	Strong transcription	Aorta	Aorta
18	chr11:94320200-94326400	Strong transcription	Rectal Mucosa Donor 31	rectum
19	chr11:94320400-94324600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:94320400-94326000	Weak transcription	Brain Substantia Nigra	brain
21	chr11:94320600-94326000	Weak transcription	NHDF-Ad	bronchial
22	chr11:94320600-94333400	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr11:94320800-94324400	Strong transcription	Fetal Intestine Large	intestine
24	chr11:94320800-94324800	Strong transcription	Fetal Intestine Small	intestine
25	chr11:94320800-94325400	Weak transcription	Brain Hippocampus Middle	brain
26	chr11:94321000-94331400	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr11:94321000-94334800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr11:94321000-94336400	Weak transcription	Small Intestine	intestine
29	chr11:94321000-94344800	Weak transcription	Lung	lung
30	chr11:94321400-94342600	Weak transcription	Fetal Brain Female	brain
31	chr11:94321600-94324800	Strong transcription	Adipose Nuclei	Adipose
32	chr11:94321600-94325600	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr11:94322000-94325000	Strong transcription	Stomach Smooth Muscle	stomach
34	chr11:94322000-94325200	Enhancers	Placenta Amnion	Placenta Amnion
35	chr11:94322000-94325600	Weak transcription	Liver	Liver
36	chr11:94322200-94324400	Strong transcription	Fetal Stomach	stomach
37	chr11:94322200-94324600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr11:94322200-94325000	Strong transcription	Ovary	ovary
39	chr11:94322200-94329400	Strong transcription	Duodenum Mucosa	Duodenum
40	chr11:94322200-94330800	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr11:94322200-94343600	Weak transcription	Psoas Muscle	Psoas
42	chr11:94322400-94324600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr11:94322400-94324600	Strong transcription	Pancreas	Pancrea
44	chr11:94322400-94324600	Strong transcription	Spleen	Spleen
45	chr11:94322400-94324800	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr11:94322400-94324800	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr11:94322400-94324800	Strong transcription	Sigmoid Colon	Sigmoid Colon
48	chr11:94322400-94325200	Strong transcription	Primary T cells from cord blood	blood
49	chr11:94322600-94324800	Strong transcription	Brain Anterior Caudate	brain
50	chr11:94322600-94341600	Weak transcription	Right Ventricle	heart

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