Variant report

Variant	rs7342170
Chromosome Location	chr11:94314477-94314478
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94273988..94276726-chr11:94311479..94314894,4	K562	blood:
2	chr11:94310489..94312156-chr11:94313831..94316959,3	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10765688	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10831242	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11020815	0.80[ASN][1000 genomes]
rs11020821	0.80[ASN][1000 genomes]
rs11020833	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11020834	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11020835	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11020836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11020837	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11020840	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11020845	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11020846	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs11020847	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11824838	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12574292	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12576083	0.81[ASN][1000 genomes]
rs16912567	0.81[ASN][1000 genomes]
rs1939139	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2155098	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2186624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2212361	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57607909	0.87[ASN][1000 genomes]
rs7107559	0.83[CEU][hapmap];0.93[EUR][1000 genomes]
rs7110811	0.90[EUR][1000 genomes]
rs7111719	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs7120587	0.84[CEU][hapmap];0.90[EUR][1000 genomes]
rs7126782	0.83[CEU][hapmap];0.93[EUR][1000 genomes]
rs72963816	0.81[ASN][1000 genomes]
rs72963821	0.81[ASN][1000 genomes]
rs72963823	0.81[ASN][1000 genomes]
rs72963846	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72963850	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72963868	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7342170	MRE11A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94281000-94319200	Weak transcription	Aorta	Aorta
2	chr11:94282200-94317400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:94282200-94322600	Weak transcription	Brain Anterior Caudate	brain
4	chr11:94282600-94322200	Weak transcription	Fetal Stomach	stomach
5	chr11:94284000-94323400	Weak transcription	Fetal Muscle Leg	muscle
6	chr11:94291800-94322000	Weak transcription	Colon Smooth Muscle	Colon
7	chr11:94293000-94322400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:94293600-94322400	Weak transcription	Gastric	stomach
9	chr11:94296600-94344800	Weak transcription	Left Ventricle	heart
10	chr11:94297200-94322200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr11:94303000-94325400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr11:94303600-94314600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr11:94304400-94319600	Weak transcription	Fetal Intestine Small	intestine
14	chr11:94307600-94324000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:94307800-94316800	Weak transcription	Fetal Intestine Large	intestine
16	chr11:94308000-94322200	Weak transcription	Ovary	ovary
17	chr11:94308000-94322400	Weak transcription	Pancreas	Pancrea
18	chr11:94308200-94342800	Weak transcription	K562	blood
19	chr11:94308600-94317000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:94308600-94335400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr11:94309200-94322200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:94309200-94342600	Weak transcription	Primary hematopoietic stem cells	blood
23	chr11:94310400-94316800	Weak transcription	Duodenum Mucosa	Duodenum
24	chr11:94311600-94322400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr11:94312200-94316600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr11:94312200-94316600	Weak transcription	HUVEC	blood vessel
27	chr11:94312400-94314600	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr11:94312400-94320200	Weak transcription	Brain Hippocampus Middle	brain
29	chr11:94312800-94325200	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr11:94313800-94324000	Weak transcription	Fetal Muscle Trunk	muscle
31	chr11:94314400-94314600	Enhancers	GM12878-XiMat	blood
32	chr11:94314400-94315200	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr11:94314400-94316600	Enhancers	Primary neutrophils fromperipheralblood	blood

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