Variant report

Variant	rs72963868
Chromosome Location	chr11:94317709-94317710
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94226470..94228105-chr11:94316130..94318288,2	K562	blood:

Variant related genes	Relation type
ENSG00000168876	Chromatin interaction
ENSG00000020922	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10765688	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10831242	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11020815	0.81[ASN][1000 genomes]
rs11020821	0.81[ASN][1000 genomes]
rs11020833	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11020834	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11020835	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11020836	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11020837	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11020840	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020846	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11020847	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11824838	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12574292	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12576083	0.82[ASN][1000 genomes]
rs16912567	0.82[ASN][1000 genomes]
rs1939139	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2155098	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2186624	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2212361	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57607909	0.88[ASN][1000 genomes]
rs7107559	0.93[EUR][1000 genomes]
rs7110811	0.90[EUR][1000 genomes]
rs7111719	0.90[EUR][1000 genomes]
rs7120587	0.90[EUR][1000 genomes]
rs7126782	0.93[EUR][1000 genomes]
rs72963816	0.82[ASN][1000 genomes]
rs72963821	0.82[ASN][1000 genomes]
rs72963823	0.82[ASN][1000 genomes]
rs72963846	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72963850	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7342170	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94281000-94319200	Weak transcription	Aorta	Aorta
2	chr11:94282200-94322600	Weak transcription	Brain Anterior Caudate	brain
3	chr11:94282600-94322200	Weak transcription	Fetal Stomach	stomach
4	chr11:94284000-94323400	Weak transcription	Fetal Muscle Leg	muscle
5	chr11:94291800-94322000	Weak transcription	Colon Smooth Muscle	Colon
6	chr11:94293000-94322400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr11:94293600-94322400	Weak transcription	Gastric	stomach
8	chr11:94296600-94344800	Weak transcription	Left Ventricle	heart
9	chr11:94297200-94322200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr11:94303000-94325400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:94304400-94319600	Weak transcription	Fetal Intestine Small	intestine
12	chr11:94307600-94324000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr11:94308000-94322200	Weak transcription	Ovary	ovary
14	chr11:94308000-94322400	Weak transcription	Pancreas	Pancrea
15	chr11:94308200-94342800	Weak transcription	K562	blood
16	chr11:94308600-94335400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:94309200-94322200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:94309200-94342600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr11:94311600-94322400	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr11:94312400-94320200	Weak transcription	Brain Hippocampus Middle	brain
21	chr11:94312800-94325200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr11:94313800-94324000	Weak transcription	Fetal Muscle Trunk	muscle
23	chr11:94314600-94318400	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr11:94315200-94317800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
25	chr11:94315200-94326000	Weak transcription	Brain Angular Gyrus	brain
26	chr11:94315800-94320600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr11:94316200-94317800	Flanking Active TSS	GM12878-XiMat	blood
28	chr11:94316200-94328400	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr11:94316600-94317800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:94316600-94318000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:94316600-94318000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
32	chr11:94317000-94317800	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr11:94317000-94317800	Strong transcription	Duodenum Mucosa	Duodenum
34	chr11:94317000-94318000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr11:94317200-94317800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
36	chr11:94317200-94319400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr11:94317400-94318000	Enhancers	Stomach Smooth Muscle	stomach
38	chr11:94317400-94319800	Weak transcription	Fetal Intestine Large	intestine
39	chr11:94317400-94322400	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr11:94317600-94318000	Enhancers	Placenta	Placenta
41	chr11:94317600-94318000	Enhancers	Fetal Thymus	thymus
42	chr11:94317600-94318800	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr11:94317600-94320200	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr11:94317600-94321600	Weak transcription	Adipose Nuclei	Adipose
45	chr11:94317600-94333600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:94317600-94335800	Weak transcription	Primary B cells from cord blood	blood
47	chr11:94317600-94335800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr11:94317600-94336200	Weak transcription	Esophagus	oesophagus

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