Variant report

Variant	rs1939139
Chromosome Location	chr11:94307002-94307003
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94299277..94302008-chr11:94304301..94308531,3	K562	blood:

Variant related genes	Relation type
ENSG00000134627	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10765688	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10831242	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020812	0.81[ASN][1000 genomes]
rs11020815	0.83[ASN][1000 genomes]
rs11020821	0.83[ASN][1000 genomes]
rs11020833	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11020834	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11020835	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020836	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020837	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11020840	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11020845	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11020846	0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.80[AMR][1000 genomes]
rs11020847	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11824838	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12286498	0.81[ASN][1000 genomes]
rs12294732	0.81[ASN][1000 genomes]
rs12574292	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12576083	0.83[ASN][1000 genomes]
rs16912567	0.83[ASN][1000 genomes]
rs16924610	0.82[ASN][1000 genomes]
rs2155098	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2186624	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2212361	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34185869	0.81[ASN][1000 genomes]
rs34288874	0.81[ASN][1000 genomes]
rs56365771	0.82[ASN][1000 genomes]
rs57607909	0.86[ASN][1000 genomes]
rs7107559	0.90[TSI][hapmap];0.93[EUR][1000 genomes]
rs7110811	0.90[EUR][1000 genomes]
rs7111719	0.81[CEU][hapmap];0.90[EUR][1000 genomes]
rs7120587	0.90[EUR][1000 genomes]
rs7126782	0.90[TSI][hapmap];0.93[EUR][1000 genomes]
rs72963805	0.82[ASN][1000 genomes]
rs72963816	0.83[ASN][1000 genomes]
rs72963821	0.83[ASN][1000 genomes]
rs72963823	0.83[ASN][1000 genomes]
rs72963846	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72963850	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72963868	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72980480	0.82[ASN][1000 genomes]
rs7342170	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7931179	0.80[ASN][1000 genomes]
rs7934178	0.81[ASN][1000 genomes]
rs7934183	0.81[ASN][1000 genomes]
rs7934286	0.81[ASN][1000 genomes]
rs7945897	0.81[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1939139	MRE11A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94281000-94319200	Weak transcription	Aorta	Aorta
2	chr11:94282200-94317400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:94282200-94322600	Weak transcription	Brain Anterior Caudate	brain
4	chr11:94282600-94322200	Weak transcription	Fetal Stomach	stomach
5	chr11:94284000-94323400	Weak transcription	Fetal Muscle Leg	muscle
6	chr11:94291800-94322000	Weak transcription	Colon Smooth Muscle	Colon
7	chr11:94293000-94322400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:94293600-94322400	Weak transcription	Gastric	stomach
9	chr11:94296600-94307800	Weak transcription	Right Atrium	heart
10	chr11:94296600-94344800	Weak transcription	Left Ventricle	heart
11	chr11:94297200-94307400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:94297200-94307400	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr11:94297200-94322200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr11:94297400-94310000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr11:94298400-94307400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr11:94299800-94307400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr11:94300800-94307600	Weak transcription	Fetal Intestine Large	intestine
18	chr11:94301600-94307200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:94302200-94307400	Weak transcription	K562	blood
20	chr11:94302200-94307600	Weak transcription	Pancreas	Pancrea
21	chr11:94303000-94325400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr11:94303600-94314600	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr11:94304400-94319600	Weak transcription	Fetal Intestine Small	intestine
24	chr11:94306000-94307200	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr11:94306000-94307400	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr11:94307000-94307200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr11:94307000-94307400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr11:94307000-94307400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr11:94307000-94307600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr11:94307000-94308200	Enhancers	Placenta Amnion	Placenta Amnion

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