Variant report

Variant	rs72963846
Chromosome Location	chr11:94307762-94307763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94299277..94302008-chr11:94304301..94308531,3	K562	blood:

Variant related genes	Relation type
ENSG00000134627	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10765688	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10831242	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020812	0.81[ASN][1000 genomes]
rs11020815	0.83[ASN][1000 genomes]
rs11020821	0.83[ASN][1000 genomes]
rs11020833	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11020834	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11020835	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020836	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020837	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11020840	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11020846	0.84[AMR][1000 genomes]
rs11020847	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11824838	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12286498	0.81[ASN][1000 genomes]
rs12294732	0.81[ASN][1000 genomes]
rs12574292	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12576083	0.83[ASN][1000 genomes]
rs16912567	0.83[ASN][1000 genomes]
rs16924610	0.82[ASN][1000 genomes]
rs1939139	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155098	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2186624	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2212361	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34185869	0.81[ASN][1000 genomes]
rs34288874	0.81[ASN][1000 genomes]
rs56365771	0.82[ASN][1000 genomes]
rs57607909	0.86[ASN][1000 genomes]
rs7107559	0.93[EUR][1000 genomes]
rs7110811	0.90[EUR][1000 genomes]
rs7111719	0.90[EUR][1000 genomes]
rs7120587	0.90[EUR][1000 genomes]
rs7126782	0.93[EUR][1000 genomes]
rs72963805	0.82[ASN][1000 genomes]
rs72963816	0.83[ASN][1000 genomes]
rs72963821	0.83[ASN][1000 genomes]
rs72963823	0.83[ASN][1000 genomes]
rs72963850	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72963868	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72980480	0.82[ASN][1000 genomes]
rs7342170	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7931179	0.80[ASN][1000 genomes]
rs7934178	0.81[ASN][1000 genomes]
rs7934183	0.81[ASN][1000 genomes]
rs7934286	0.81[ASN][1000 genomes]
rs7945897	0.81[ASN][1000 genomes]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94281000-94319200	Weak transcription	Aorta	Aorta
2	chr11:94282200-94317400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:94282200-94322600	Weak transcription	Brain Anterior Caudate	brain
4	chr11:94282600-94322200	Weak transcription	Fetal Stomach	stomach
5	chr11:94284000-94323400	Weak transcription	Fetal Muscle Leg	muscle
6	chr11:94291800-94322000	Weak transcription	Colon Smooth Muscle	Colon
7	chr11:94293000-94322400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:94293600-94322400	Weak transcription	Gastric	stomach
9	chr11:94296600-94307800	Weak transcription	Right Atrium	heart
10	chr11:94296600-94344800	Weak transcription	Left Ventricle	heart
11	chr11:94297200-94322200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr11:94297400-94310000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr11:94303000-94325400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr11:94303600-94314600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr11:94304400-94319600	Weak transcription	Fetal Intestine Small	intestine
16	chr11:94307000-94308200	Enhancers	Placenta Amnion	Placenta Amnion
17	chr11:94307200-94308200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
18	chr11:94307200-94308400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:94307200-94309400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:94307400-94307800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:94307400-94307800	Enhancers	Primary B cells from cord blood	blood
22	chr11:94307400-94307800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr11:94307400-94307800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr11:94307400-94307800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
25	chr11:94307400-94307800	Flanking Active TSS	NHDF-Ad	bronchial
26	chr11:94307400-94308000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr11:94307400-94308000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr11:94307400-94308000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr11:94307400-94308000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr11:94307400-94308000	Active TSS	Primary hematopoietic stem cells	blood
31	chr11:94307400-94308000	Flanking Active TSS	Osteobl	bone
32	chr11:94307400-94308200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr11:94307400-94308200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
34	chr11:94307400-94308200	Enhancers	K562	blood
35	chr11:94307600-94307800	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr11:94307600-94307800	Flanking Active TSS	Adipose Nuclei	Adipose
37	chr11:94307600-94307800	ZNF genes & repeats	Fetal Intestine Large	intestine
38	chr11:94307600-94307800	Flanking Active TSS	Ovary	ovary
39	chr11:94307600-94308000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr11:94307600-94308000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:94307600-94308000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr11:94307600-94308000	Enhancers	Placenta	Placenta
43	chr11:94307600-94308000	Enhancers	Pancreas	Pancrea
44	chr11:94307600-94308000	Active TSS	Monocytes-CD14+_RO01746	blood
45	chr11:94307600-94308200	Enhancers	HSMMtube	muscle
46	chr11:94307600-94308400	Enhancers	Muscle Satellite Cultured Cells	--
47	chr11:94307600-94324000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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