Variant report

Variant	rs12574292
Chromosome Location	chr11:94319818-94319819
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94311343..94313725-chr11:94319457..94321521,2	MCF-7	breast:
2	chr11:94276579..94278330-chr11:94317929..94319821,2	K562	blood:

Variant related genes	Relation type
ENSG00000196371	Chromatin interaction
ENSG00000134627	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10765688	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10831242	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11020815	0.81[ASN][1000 genomes]
rs11020821	0.81[ASN][1000 genomes]
rs11020833	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11020834	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11020835	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11020836	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11020837	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11020840	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020845	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11020846	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11020847	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11824838	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12576083	0.82[ASN][1000 genomes]
rs16912567	0.82[ASN][1000 genomes]
rs16924599	0.81[CHB][hapmap]
rs16924603	0.81[CHB][hapmap]
rs1939139	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2155098	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2186624	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2212361	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57607909	0.88[ASN][1000 genomes]
rs7107559	0.91[CEU][hapmap];0.93[EUR][1000 genomes]
rs7110811	0.91[EUR][1000 genomes]
rs7111719	0.90[CEU][hapmap];0.91[EUR][1000 genomes]
rs7120587	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs7126782	0.91[CEU][hapmap];0.93[EUR][1000 genomes]
rs72963816	0.82[ASN][1000 genomes]
rs72963821	0.82[ASN][1000 genomes]
rs72963823	0.82[ASN][1000 genomes]
rs72963846	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72963850	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72963868	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7342170	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94282200-94322600	Weak transcription	Brain Anterior Caudate	brain
2	chr11:94282600-94322200	Weak transcription	Fetal Stomach	stomach
3	chr11:94284000-94323400	Weak transcription	Fetal Muscle Leg	muscle
4	chr11:94291800-94322000	Weak transcription	Colon Smooth Muscle	Colon
5	chr11:94293000-94322400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr11:94293600-94322400	Weak transcription	Gastric	stomach
7	chr11:94296600-94344800	Weak transcription	Left Ventricle	heart
8	chr11:94297200-94322200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr11:94303000-94325400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:94307600-94324000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr11:94308000-94322200	Weak transcription	Ovary	ovary
12	chr11:94308000-94322400	Weak transcription	Pancreas	Pancrea
13	chr11:94308200-94342800	Weak transcription	K562	blood
14	chr11:94308600-94335400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:94309200-94322200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:94309200-94342600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr11:94311600-94322400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr11:94312400-94320200	Weak transcription	Brain Hippocampus Middle	brain
19	chr11:94312800-94325200	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr11:94313800-94324000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr11:94315200-94326000	Weak transcription	Brain Angular Gyrus	brain
22	chr11:94315800-94320600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr11:94316200-94328400	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr11:94317400-94322400	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr11:94317600-94320200	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr11:94317600-94321600	Weak transcription	Adipose Nuclei	Adipose
27	chr11:94317600-94333600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr11:94317600-94335800	Weak transcription	Primary B cells from cord blood	blood
29	chr11:94317600-94335800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr11:94317600-94336200	Weak transcription	Esophagus	oesophagus
31	chr11:94317800-94322200	Weak transcription	Duodenum Mucosa	Duodenum
32	chr11:94317800-94322400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr11:94318000-94322000	Weak transcription	Stomach Smooth Muscle	stomach
34	chr11:94318000-94322400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr11:94318000-94335800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:94318400-94320400	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr11:94318400-94328000	Weak transcription	GM12878-XiMat	blood
38	chr11:94318600-94322200	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr11:94318800-94320600	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr11:94318800-94321600	Enhancers	Placenta Amnion	Placenta Amnion
41	chr11:94319000-94320400	Enhancers	Brain Substantia Nigra	brain
42	chr11:94319200-94322400	Weak transcription	Primary T cells from cord blood	blood
43	chr11:94319200-94324600	Strong transcription	Aorta	Aorta
44	chr11:94319400-94320400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr11:94319600-94320600	Enhancers	Fetal Intestine Small	intestine
46	chr11:94319800-94320600	Enhancers	Fetal Intestine Large	intestine
47	chr11:94319800-94323200	Enhancers	Placenta	Placenta

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