Variant report

Variant	rs12283500
Chromosome Location	chr11:63130311-63130312
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10750998	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11605137	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1193718	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1193726	0.88[EUR][1000 genomes]
rs1193729	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1193786	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1193787	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1193789	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1193904	0.81[ASN][1000 genomes]
rs1193905	0.81[ASN][1000 genomes]
rs1201559	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1205166	0.88[EUR][1000 genomes]
rs1205186	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12293171	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1404608	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1608760	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1723213	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1783634	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1789327	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1789334	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1790218	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1790226	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2958546	0.94[ASN][1000 genomes]
rs3915142	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3937020	0.81[ASN][1000 genomes]
rs4121881	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4445638	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs471044	0.90[ASN][1000 genomes]
rs474096	0.82[ASN][1000 genomes]
rs474191	0.82[ASN][1000 genomes]
rs474815	0.81[ASN][1000 genomes]
rs474874	0.82[ASN][1000 genomes]
rs483012	0.82[ASN][1000 genomes]
rs486460	0.81[ASN][1000 genomes]
rs488803	0.99[ASN][1000 genomes]
rs494608	0.95[ASN][1000 genomes]
rs4963405	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs499003	0.92[ASN][1000 genomes]
rs502642	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs505653	0.82[ASN][1000 genomes]
rs510547	0.95[ASN][1000 genomes]
rs511480	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs513338	0.82[ASN][1000 genomes]
rs515213	0.82[ASN][1000 genomes]
rs516536	0.98[ASN][1000 genomes]
rs517655	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs524724	0.82[ASN][1000 genomes]
rs527027	0.81[ASN][1000 genomes]
rs527869	0.81[ASN][1000 genomes]
rs532085	0.82[ASN][1000 genomes]
rs534799	0.82[ASN][1000 genomes]
rs540141	0.81[ASN][1000 genomes]
rs543429	0.81[ASN][1000 genomes]
rs548885	0.82[ASN][1000 genomes]
rs554430	0.81[ASN][1000 genomes]
rs556730	0.96[ASN][1000 genomes]
rs557658	0.82[ASN][1000 genomes]
rs557879	0.82[ASN][1000 genomes]
rs558472	0.93[ASN][1000 genomes]
rs563948	0.94[ASN][1000 genomes]
rs564917	0.94[ASN][1000 genomes]
rs565787	0.82[ASN][1000 genomes]
rs566456	0.99[ASN][1000 genomes]
rs572017	0.82[ASN][1000 genomes]
rs575009	0.82[ASN][1000 genomes]
rs576641	0.82[ASN][1000 genomes]
rs688999	0.92[ASN][1000 genomes]
rs7130728	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv1053585	chr11:63057767-63180308	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv555178	chr11:63078742-63197930	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12283500	SLC22A10	cis	Esophagus Muscularis	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63128400-63130400	Enhancers	Adipose Nuclei	Adipose
2	chr11:63129600-63130600	Enhancers	HepG2	liver
3	chr11:63129800-63130400	Enhancers	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links