Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:63143315..63147514-chr11:63148756..63151985,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HRASLS5-3	chr11:63148132-63151901	ucscGeneNc_uc001nxj_1

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10750998	0.96[ASN][1000 genomes]
rs11605137	0.97[ASN][1000 genomes]
rs1193786	0.83[ASN][1000 genomes]
rs1193787	0.85[ASN][1000 genomes]
rs12283500	0.90[ASN][1000 genomes]
rs12293171	0.87[ASN][1000 genomes]
rs1790226	0.85[ASN][1000 genomes]
rs2958546	0.87[ASN][1000 genomes]
rs4121881	0.92[ASN][1000 genomes]
rs488803	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs494608	0.94[ASN][1000 genomes]
rs4963405	0.97[ASN][1000 genomes]
rs499003	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs502642	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs510547	0.91[ASN][1000 genomes]
rs511480	0.96[ASN][1000 genomes]
rs516536	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs517655	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs556730	0.94[ASN][1000 genomes]
rs558472	0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs563948	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs564917	0.85[ASN][1000 genomes]
rs566456	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs688999	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv1053585	chr11:63057767-63180308	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv555178	chr11:63078742-63197930	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1822068	chr11:63146055-63239984	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63141400-63153200	Weak transcription	HepG2	liver
2	chr11:63148600-63152200	Strong transcription	Liver	Liver

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