Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10750998	0.95[ASN][1000 genomes]
rs11605137	0.94[ASN][1000 genomes]
rs1193786	0.86[ASN][1000 genomes]
rs1193787	0.90[ASN][1000 genomes]
rs12283500	0.95[ASN][1000 genomes]
rs12293171	0.90[ASN][1000 genomes]
rs1790226	0.90[ASN][1000 genomes]
rs2958546	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4121881	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs471044	0.91[ASN][1000 genomes]
rs488803	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs494608	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4963405	0.94[ASN][1000 genomes]
rs499003	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs502642	0.92[ASN][1000 genomes]
rs511480	0.95[ASN][1000 genomes]
rs516536	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs517655	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs526686	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs538309	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs556730	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs558472	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs563948	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs564917	0.80[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs566456	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs688999	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv1053585	chr11:63057767-63180308	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv555178	chr11:63078742-63197930	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63138000-63141000	Weak transcription	Pancreas	Pancrea
2	chr11:63139800-63140200	Weak transcription	HepG2	liver
3	chr11:63139800-63141800	Enhancers	Liver	Liver

Quick Search: