Variant report

Variant	rs12286406
Chromosome Location	chr11:120533650-120533651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1043467	1.00[EUR][1000 genomes]
rs11217943	1.00[EUR][1000 genomes]
rs12271692	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12273297	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17124122	1.00[EUR][1000 genomes]
rs73584172	1.00[EUR][1000 genomes]
rs73584179	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468881	chr11:120446830-120551100	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv556476	chr11:120446830-120551100	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120512800-120537800	Weak transcription	Ovary	ovary
2	chr11:120514400-120543600	Weak transcription	Brain Substantia Nigra	brain
3	chr11:120516800-120534200	Weak transcription	Right Atrium	heart
4	chr11:120520000-120543800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:120530600-120534200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:120531000-120534200	Enhancers	Spleen	Spleen
7	chr11:120531200-120533800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:120532200-120533800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr11:120532600-120534000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr11:120532800-120534200	Enhancers	H1 Cell Line	embryonic stem cell
11	chr11:120532800-120534400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:120533000-120534000	Enhancers	HepG2	liver
13	chr11:120533200-120551800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:120533400-120533800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr11:120533400-120536600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:120533400-120538000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr11:120533400-120543800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr11:120533600-120534200	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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