Variant report

Variant	rs17124122
Chromosome Location	chr11:120511331-120511332
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1043467	1.00[EUR][1000 genomes]
rs10502239	1.00[TSI][hapmap]
rs11217943	1.00[EUR][1000 genomes]
rs12271692	1.00[EUR][1000 genomes]
rs12273297	1.00[EUR][1000 genomes]
rs12286406	1.00[EUR][1000 genomes]
rs17124064	1.00[TSI][hapmap]
rs17124128	0.87[AMR][1000 genomes]
rs34217050	1.00[EUR][1000 genomes]
rs73584172	1.00[EUR][1000 genomes]
rs73584179	1.00[EUR][1000 genomes]
rs7926067	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv468881	chr11:120446830-120551100	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv556476	chr11:120446830-120551100	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120505400-120512600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:120505800-120511600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:120506200-120511600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:120506200-120511800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:120506200-120512400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:120506400-120511400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:120506400-120511600	Weak transcription	Fetal Brain Female	brain
8	chr11:120508200-120511600	Weak transcription	Fetal Brain Male	brain
9	chr11:120510200-120512800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:120511000-120511600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links