Variant report

Variant	rs12287179
Chromosome Location	chr11:87140079-87140080
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11235141	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11827772	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12272384	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12274398	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277664	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12281027	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12282338	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12291004	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12291930	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12294204	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12295921	0.96[ASN][1000 genomes]
rs17759922	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4297485	0.96[ASN][1000 genomes]
rs61427296	0.83[EUR][1000 genomes]
rs73537969	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1046288	chr11:86757573-87158571	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv555714	chr11:87058981-87399218	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1039172	chr11:87068731-87385458	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:87131000-87143000	Weak transcription	Adipose Nuclei	Adipose
2	chr11:87135600-87140600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:87135800-87140200	Enhancers	Osteobl	bone
4	chr11:87137000-87147000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:87137800-87143000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:87137800-87143200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr11:87138800-87144400	Enhancers	NHDF-Ad	bronchial
8	chr11:87139400-87141800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:87139600-87141600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:87139600-87141600	Weak transcription	HSMMtube	muscle
11	chr11:87139600-87142400	Weak transcription	HSMM	muscle
12	chr11:87139600-87142600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:87139600-87142800	Weak transcription	NH-A	brain
14	chr11:87139600-87144600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr11:87139800-87141600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr11:87139800-87141800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:87139800-87141800	Weak transcription	NHLF	lung
18	chr11:87139800-87142000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:87140000-87141800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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