Variant report

Variant	rs12291004
Chromosome Location	chr11:87161851-87161852
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11235141	0.86[ASN][1000 genomes]
rs11827772	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12272384	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274398	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12277664	0.86[ASN][1000 genomes]
rs12281027	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12282338	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12287179	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12291930	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12294204	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12295921	0.89[ASN][1000 genomes]
rs17759922	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4297485	0.89[ASN][1000 genomes]
rs61427296	0.80[EUR][1000 genomes]
rs73537969	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv555714	chr11:87058981-87399218	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1039172	chr11:87068731-87385458	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:87149600-87162000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr11:87151600-87165200	Weak transcription	Colon Smooth Muscle	Colon
3	chr11:87156400-87165000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:87156800-87164000	Weak transcription	Fetal Heart	heart
5	chr11:87156800-87164800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:87157000-87162000	Weak transcription	HSMMtube	muscle
7	chr11:87157000-87162600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr11:87157000-87165000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:87157200-87162200	Weak transcription	Osteobl	bone
10	chr11:87157600-87162200	Weak transcription	NHDF-Ad	bronchial
11	chr11:87157800-87164600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:87161800-87162000	Enhancers	NHLF	lung
13	chr11:87161800-87162200	Enhancers	Fetal Kidney	kidney
14	chr11:87161800-87162800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:87161800-87163400	Enhancers	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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