Variant report

Variant	rs61427296
Chromosome Location	chr11:87132243-87132244
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11827772	0.85[EUR][1000 genomes]
rs12272384	0.80[EUR][1000 genomes]
rs12274398	0.83[EUR][1000 genomes]
rs12281027	0.83[EUR][1000 genomes]
rs12282338	0.87[EUR][1000 genomes]
rs12287179	0.83[EUR][1000 genomes]
rs12291004	0.80[EUR][1000 genomes]
rs12291930	0.85[EUR][1000 genomes]
rs12294204	0.85[EUR][1000 genomes]
rs17759922	0.87[EUR][1000 genomes]
rs73535809	0.85[ASN][1000 genomes]
rs73537969	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1046288	chr11:86757573-87158571	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv555714	chr11:87058981-87399218	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1039172	chr11:87068731-87385458	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:87130200-87132400	Enhancers	HUVEC	blood vessel
2	chr11:87130200-87134200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:87130400-87133800	Enhancers	Osteobl	bone
4	chr11:87130600-87133200	Weak transcription	Right Atrium	heart
5	chr11:87130800-87133000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:87131000-87143000	Weak transcription	Adipose Nuclei	Adipose
7	chr11:87131200-87132600	Weak transcription	NHEK	skin
8	chr11:87132000-87134600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:87132200-87132400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:87132200-87132400	Enhancers	Aorta	Aorta
11	chr11:87132200-87132400	Enhancers	Spleen	Spleen
12	chr11:87132200-87132800	Enhancers	NH-A	brain
13	chr11:87132200-87133600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:87132200-87134200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:87132200-87134600	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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