Variant report

Variant	rs1228898
Chromosome Location	chr7:84145776-84145777
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1029541	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10435465	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11978829	0.93[ASN][1000 genomes]
rs1228859	0.84[CEU][hapmap]
rs1228860	0.86[CEU][hapmap]
rs1228909	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1228912	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1228913	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1228915	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1228916	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1228919	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1228933	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1228937	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1228938	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1228939	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1228943	0.87[EUR][1000 genomes]
rs1228944	0.86[EUR][1000 genomes]
rs1228945	0.87[EUR][1000 genomes]
rs1228947	0.87[EUR][1000 genomes]
rs1228948	0.82[EUR][1000 genomes]
rs1228949	0.86[EUR][1000 genomes]
rs1228950	0.86[EUR][1000 genomes]
rs1228965	0.88[EUR][1000 genomes]
rs1228966	0.90[EUR][1000 genomes]
rs1234538	0.86[EUR][1000 genomes]
rs1235295	0.88[EUR][1000 genomes]
rs13223991	0.88[EUR][1000 genomes]
rs2079352	0.87[EUR][1000 genomes]
rs2527528	0.87[EUR][1000 genomes]
rs2706902	0.88[EUR][1000 genomes]
rs2706907	0.87[EUR][1000 genomes]
rs3094908	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55649642	0.80[ASN][1000 genomes]
rs57965929	0.87[ASN][1000 genomes]
rs61538559	0.80[ASN][1000 genomes]
rs6949793	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs73712927	0.88[ASN][1000 genomes]
rs73712958	0.80[ASN][1000 genomes]
rs757747	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9642180	0.91[ASN][1000 genomes]
rs9642182	0.88[ASN][1000 genomes]
rs9642183	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv2754468	chr7:83851249-84166749	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv888634	chr7:84086502-84196258	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv888635	chr7:84086502-84344258	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv888636	chr7:84117594-84334498	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv607710	chr7:84137622-84168615	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv888637	chr7:84137622-84213008	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv464620	chr7:84141077-84289915	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv607711	chr7:84141077-84289915	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv1031149	chr7:84144990-84404356	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84143800-84152600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:84144800-84146000	Weak transcription	Colon Smooth Muscle	Colon

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