Variant report

Variant	rs2079352
Chromosome Location	chr7:84077124-84077125
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1029541	0.84[EUR][1000 genomes]
rs1228859	0.95[CEU][hapmap]
rs1228860	0.95[CEU][hapmap]
rs1228898	0.87[EUR][1000 genomes]
rs1228909	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1228912	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1228913	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1228915	0.85[EUR][1000 genomes]
rs1228916	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1228919	0.86[EUR][1000 genomes]
rs1228933	0.89[EUR][1000 genomes]
rs1228937	0.85[EUR][1000 genomes]
rs1228938	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1228939	0.95[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1228943	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1228944	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1228945	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1228946	0.84[EUR][1000 genomes]
rs1228947	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1228948	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1228949	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1228950	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1228952	0.85[EUR][1000 genomes]
rs1228953	0.85[EUR][1000 genomes]
rs1228954	0.85[EUR][1000 genomes]
rs1228958	0.85[EUR][1000 genomes]
rs1228959	0.85[EUR][1000 genomes]
rs1228961	0.85[EUR][1000 genomes]
rs1228963	0.83[EUR][1000 genomes]
rs1228965	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1228966	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1234538	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1235295	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1634614	0.85[EUR][1000 genomes]
rs1715510	0.85[EUR][1000 genomes]
rs2428808	0.83[EUR][1000 genomes]
rs2527528	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2527530	0.86[EUR][1000 genomes]
rs2706902	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2706907	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3094908	0.85[EUR][1000 genomes]
rs505758	0.86[CEU][hapmap]
rs757747	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv2754468	chr7:83851249-84166749	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1023848	chr7:83985028-84101774	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2761342	chr7:83985028-84101798	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv534431	chr7:84001059-84138511	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	nsv1034270	chr7:84068277-84101774	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84076000-84077400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:84076400-84077400	ZNF genes & repeats	Fetal Muscle Trunk	muscle
3	chr7:84076400-84077400	ZNF genes & repeats	Fetal Muscle Leg	muscle

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