Variant report

Variant	rs1228915
Chromosome Location	chr7:84131097-84131098
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1029541	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10435465	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11978829	0.93[ASN][1000 genomes]
rs1228859	0.89[CEU][hapmap]
rs1228860	0.90[CEU][hapmap]
rs1228898	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1228909	0.92[EUR][1000 genomes]
rs1228912	0.94[EUR][1000 genomes]
rs1228913	0.97[EUR][1000 genomes]
rs1228916	0.97[EUR][1000 genomes]
rs1228919	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1228933	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1228937	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1228938	0.97[EUR][1000 genomes]
rs1228939	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1228943	0.85[EUR][1000 genomes]
rs1228944	0.84[EUR][1000 genomes]
rs1228945	0.85[EUR][1000 genomes]
rs1228947	0.85[EUR][1000 genomes]
rs1228949	0.84[EUR][1000 genomes]
rs1228950	0.84[EUR][1000 genomes]
rs1228965	0.86[EUR][1000 genomes]
rs1228966	0.88[EUR][1000 genomes]
rs1234538	0.84[EUR][1000 genomes]
rs1235295	0.86[EUR][1000 genomes]
rs13223991	0.87[EUR][1000 genomes]
rs2079352	0.85[EUR][1000 genomes]
rs2527528	0.85[EUR][1000 genomes]
rs2706902	0.87[EUR][1000 genomes]
rs2706907	0.85[EUR][1000 genomes]
rs3094908	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs505758	0.82[CEU][hapmap]
rs55649642	0.80[ASN][1000 genomes]
rs57965929	0.87[ASN][1000 genomes]
rs61538559	0.80[ASN][1000 genomes]
rs6949793	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs73712927	0.88[ASN][1000 genomes]
rs73712958	0.80[ASN][1000 genomes]
rs757747	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9642180	0.91[ASN][1000 genomes]
rs9642182	0.88[ASN][1000 genomes]
rs9642183	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv2754468	chr7:83851249-84166749	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv534431	chr7:84001059-84138511	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv888634	chr7:84086502-84196258	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv888635	chr7:84086502-84344258	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv888636	chr7:84117594-84334498	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84122800-84131400	Weak transcription	Adipose Nuclei	Adipose
2	chr7:84127600-84131400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr7:84127600-84131400	Weak transcription	Colon Smooth Muscle	Colon
4	chr7:84130600-84131800	Enhancers	Rectal Smooth Muscle	rectum

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