Variant report

Variant	rs12289139
Chromosome Location	chr11:109085407-109085408
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10502115	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11212973	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11500820	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11501030	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12274450	0.87[AMR][1000 genomes]
rs12278048	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12278419	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12280588	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12286885	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12289743	0.89[AFR][1000 genomes]
rs17109266	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17109316	0.87[AMR][1000 genomes]
rs59169120	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs60455184	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73549130	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73549140	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73549142	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73549144	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1053898	chr11:109075527-109140982	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3370197	chr11:109084192-109086190	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:109068800-109108600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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