Variant report

Variant	rs12274450
Chromosome Location	chr11:109117067-109117068
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10047461	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10502115	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11212973	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11213005	0.97[ASN][1000 genomes]
rs11213006	0.97[ASN][1000 genomes]
rs11213011	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11213019	0.91[AFR][1000 genomes]
rs11213020	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11213021	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11213022	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11500820	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11500823	0.88[AFR][1000 genomes]
rs11501030	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11501032	0.82[ASN][1000 genomes]
rs12273587	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12274062	1.00[ASN][1000 genomes]
rs12278048	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12278123	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278419	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12280588	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12280688	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12281817	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12282239	0.83[ASN][1000 genomes]
rs12282578	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12283341	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12286507	0.83[ASN][1000 genomes]
rs12286661	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12286885	1.00[AMR][1000 genomes]
rs12289139	0.87[AMR][1000 genomes]
rs12289743	0.87[AFR][1000 genomes]
rs12291774	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12291996	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17109266	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17109316	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28493423	0.97[ASN][1000 genomes]
rs55719520	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59027900	0.86[EUR][1000 genomes]
rs59169120	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59771014	0.86[ASN][1000 genomes]
rs60395902	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60455184	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60528878	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60529773	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60677425	0.84[ASN][1000 genomes]
rs60773539	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73549130	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73549140	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73549142	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73549144	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73549154	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73550605	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7947836	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1053898	chr11:109075527-109140982	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1041669	chr11:109085822-109282528	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1851153	chr11:109097430-109156782	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:109113400-109117400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:109113600-109117400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:109113600-109117400	Weak transcription	HMEC	breast
4	chr11:109114600-109117400	Weak transcription	NHEK	skin
5	chr11:109117000-109118200	Enhancers	Osteobl	bone

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