Variant report
| Variant | rs60677425 |
|---|---|
| Chromosome Location | chr11:109150136-109150137 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10047461 | 0.84[AFR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11213005 | 0.82[ASN][1000 genomes] |
| rs11213006 | 0.82[ASN][1000 genomes] |
| rs11213011 | 0.84[AFR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11213020 | 0.99[ASN][1000 genomes] |
| rs11213021 | 0.99[ASN][1000 genomes] |
| rs11213022 | 0.99[ASN][1000 genomes] |
| rs11501032 | 0.94[ASN][1000 genomes] |
| rs12273587 | 0.99[ASN][1000 genomes] |
| rs12274062 | 0.84[ASN][1000 genomes] |
| rs12274450 | 0.84[ASN][1000 genomes] |
| rs12278123 | 0.84[ASN][1000 genomes] |
| rs12280688 | 0.87[AFR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12282239 | 0.96[ASN][1000 genomes] |
| rs12282578 | 0.84[AFR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12283341 | 0.99[ASN][1000 genomes] |
| rs12286661 | 0.87[AFR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12291774 | 0.99[ASN][1000 genomes] |
| rs12291996 | 0.99[ASN][1000 genomes] |
| rs17109316 | 0.84[ASN][1000 genomes] |
| rs28493423 | 0.82[ASN][1000 genomes] |
| rs55719520 | 0.99[ASN][1000 genomes] |
| rs59169120 | 0.84[ASN][1000 genomes] |
| rs59771014 | 0.99[ASN][1000 genomes] |
| rs60395902 | 0.82[AFR][1000 genomes];0.99[ASN][1000 genomes] |
| rs60528878 | 0.96[ASN][1000 genomes] |
| rs60773539 | 0.92[AFR][1000 genomes];0.99[ASN][1000 genomes] |
| rs73550605 | 0.99[ASN][1000 genomes] |
| rs7947836 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1040650 | chr11:108859584-109174553 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1041669 | chr11:109085822-109282528 | Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv1851153 | chr11:109097430-109156782 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:109139400-109154000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr11:109147200-109152800 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
