Variant report

Variant	rs12281817
Chromosome Location	chr11:109081648-109081649
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10502115	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11212973	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11213005	0.81[ASN][1000 genomes]
rs11213006	0.81[ASN][1000 genomes]
rs11500820	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11501030	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12274062	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12274450	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12278048	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278123	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12278419	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12280588	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12286507	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12286885	0.94[ASN][1000 genomes]
rs17109266	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109316	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28493423	0.81[ASN][1000 genomes]
rs59169120	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60455184	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60529773	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549130	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549140	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549142	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549144	1.00[ASN][1000 genomes]
rs73549154	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947836	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs906911	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1053898	chr11:109075527-109140982	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:109068800-109108600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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