Variant report
| Variant | rs12291754 |
|---|---|
| Chromosome Location | chr11:108305295-108305296 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11212588 | 1.00[AMR][1000 genomes] |
| rs11212611 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11212657 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11212673 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11822807 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12270808 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12271975 | 1.00[AMR][1000 genomes] |
| rs12272964 | 0.87[AFR][1000 genomes] |
| rs12274473 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12292677 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12293324 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2235003 | 1.00[AMR][1000 genomes] |
| rs4987908 | 1.00[AMR][1000 genomes] |
| rs4987972 | 1.00[AMR][1000 genomes] |
| rs4988000 | 1.00[AMR][1000 genomes] |
| rs4988009 | 1.00[AMR][1000 genomes] |
| rs4988027 | 1.00[AMR][1000 genomes] |
| rs4988034 | 1.00[AMR][1000 genomes] |
| rs4988074 | 1.00[AMR][1000 genomes] |
| rs4988096 | 1.00[AMR][1000 genomes] |
| rs4988100 | 1.00[AMR][1000 genomes] |
| rs59333417 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1052254 | chr11:108122683-108845008 | Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv541164 | chr11:108122683-108845008 | Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
| 3 | nsv832262 | chr11:108123831-108309350 | Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv832263 | chr11:108183372-108384391 | Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:108303600-108305400 | Enhancers | NHEK | skin |
