Variant report

Variant	rs2235003
Chromosome Location	chr11:108114840-108114841
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108114532..108116350-chr11:108118215..108120268,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11212588	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11212611	1.00[AMR][1000 genomes]
rs11212657	1.00[AMR][1000 genomes]
rs11822807	1.00[AMR][1000 genomes]
rs12270808	1.00[AMR][1000 genomes]
rs12271975	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274473	1.00[AMR][1000 genomes]
rs12291754	1.00[AMR][1000 genomes]
rs12292677	1.00[AMR][1000 genomes]
rs12293324	1.00[AMR][1000 genomes]
rs4987908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4987972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988000	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988009	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988027	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988034	1.00[AMR][1000 genomes]
rs4988056	0.93[AFR][1000 genomes]
rs4988074	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988096	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4988100	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59333417	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898383	chr11:108068954-108251211	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv556430	chr11:108097333-108175462	Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv898384	chr11:108097333-108251211	Weak transcription Genic enhancers ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv556431	chr11:108098142-108115587	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv556432	chr11:108098563-108115539	Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108094600-108121600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:108094800-108116000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:108094800-108147400	Weak transcription	Esophagus	oesophagus
4	chr11:108094800-108244400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:108095000-108121400	Weak transcription	Colonic Mucosa	Colon
6	chr11:108095400-108119800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:108095800-108119800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:108095800-108122400	Weak transcription	Brain Angular Gyrus	brain
9	chr11:108096000-108148600	Weak transcription	Fetal Heart	heart
10	chr11:108096400-108156400	Weak transcription	NHLF	lung
11	chr11:108096600-108121400	Weak transcription	Spleen	Spleen
12	chr11:108096600-108128400	Weak transcription	Pancreas	Pancrea
13	chr11:108097000-108129200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:108098400-108122400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:108098400-108131600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr11:108099800-108119600	Weak transcription	NHDF-Ad	bronchial
17	chr11:108099800-108139000	Weak transcription	Hela-S3	cervix
18	chr11:108100600-108119200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr11:108100600-108128200	Weak transcription	K562	blood
20	chr11:108101200-108128200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr11:108101600-108130800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr11:108101800-108116200	Weak transcription	Ovary	ovary
23	chr11:108101800-108121400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr11:108102200-108121400	Weak transcription	Colon Smooth Muscle	Colon
25	chr11:108104200-108130000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr11:108104200-108147400	Weak transcription	Gastric	stomach
27	chr11:108104600-108121400	Weak transcription	Right Ventricle	heart
28	chr11:108104600-108144000	Weak transcription	Lung	lung
29	chr11:108105600-108130400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr11:108107200-108120000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr11:108107200-108124800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr11:108107600-108119800	Weak transcription	HMEC	breast
33	chr11:108108000-108120000	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr11:108108200-108115000	Weak transcription	Fetal Brain Female	brain
35	chr11:108108200-108116200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr11:108108200-108118200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr11:108108200-108121600	Weak transcription	Brain Germinal Matrix	brain
38	chr11:108108200-108125000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr11:108108200-108144200	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr11:108108400-108184800	Weak transcription	NHEK	skin
41	chr11:108108600-108115000	Weak transcription	HSMM	muscle
42	chr11:108108600-108118000	Weak transcription	NH-A	brain
43	chr11:108108600-108121400	Weak transcription	Fetal Kidney	kidney
44	chr11:108108600-108121600	Weak transcription	HUVEC	blood vessel
45	chr11:108108600-108125400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:108108600-108128000	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr11:108108800-108115800	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr11:108108800-108147600	Weak transcription	Psoas Muscle	Psoas
49	chr11:108109600-108130600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr11:108110000-108116800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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