Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108332332..108333917-chr11:108462867..108465354,2	K562	blood:

Variant related genes	Relation type
ENSG00000110723	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10890833	1.00[YRI][hapmap]
rs11212588	1.00[AMR][1000 genomes]
rs11212611	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11212657	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11212673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11822807	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270808	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12271975	1.00[AMR][1000 genomes]
rs12272964	0.87[AFR][1000 genomes]
rs12274473	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12291754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12292677	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2235003	1.00[AMR][1000 genomes]
rs4987908	1.00[AMR][1000 genomes]
rs4987972	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs4988000	0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs4988009	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs4988027	1.00[AMR][1000 genomes]
rs4988034	1.00[AMR][1000 genomes]
rs4988074	0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs4988096	1.00[AMR][1000 genomes]
rs4988100	1.00[AMR][1000 genomes]
rs59333417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv832263	chr11:108183372-108384391	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv971961	chr11:108329756-108333990	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108332400-108333400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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