Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10160486	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs11233848	1.00[ASW][hapmap]
rs11233853	1.00[ASW][hapmap]
rs11233873	0.86[CEU][hapmap]
rs11233885	0.87[CEU][hapmap]
rs11233886	0.87[CEU][hapmap]
rs11233887	0.87[CEU][hapmap]
rs11233891	0.87[CEU][hapmap]
rs11233892	0.87[CEU][hapmap]
rs11501812	0.87[CEU][hapmap]
rs12274345	0.87[CEU][hapmap]
rs12275051	0.87[CEU][hapmap]
rs12275529	0.87[CEU][hapmap]
rs12281901	1.00[ASW][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs12283683	0.85[CEU][hapmap]
rs12286025	0.87[CEU][hapmap]
rs12286565	0.87[CEU][hapmap]
rs12289688	0.87[CEU][hapmap]
rs12295053	0.87[CEU][hapmap]
rs1384754	1.00[ASW][hapmap]
rs17146592	0.87[CEU][hapmap]
rs7115622	0.87[CEU][hapmap]
rs7932501	0.87[CEU][hapmap]
rs7946221	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898028	chr11:83717887-83817360	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83787800-83799800	Weak transcription	Brain Angular Gyrus	brain
2	chr11:83796000-83799800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr11:83796000-83800000	Weak transcription	Fetal Brain Male	brain
4	chr11:83798400-83799600	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:83798600-83800400	Enhancers	Brain Cingulate Gyrus	brain
6	chr11:83798800-83799800	Weak transcription	Brain Anterior Caudate	brain
7	chr11:83799200-83801400	Enhancers	Brain Germinal Matrix	brain

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