Variant report
| Variant | rs7932501 |
|---|---|
| Chromosome Location | chr11:83713656-83713657 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs10160486 | 0.88[CEU][hapmap] |
| rs11233873 | 1.00[CEU][hapmap] |
| rs11233878 | 0.92[EUR][1000 genomes] |
| rs11233885 | 1.00[CEU][hapmap];0.91[EUR][1000 genomes] |
| rs11233886 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs11233887 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs11233888 | 0.92[EUR][1000 genomes] |
| rs11233889 | 0.89[EUR][1000 genomes] |
| rs11233891 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs11233892 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs11501812 | 1.00[CEU][hapmap] |
| rs12274345 | 1.00[CEU][hapmap];0.94[EUR][1000 genomes] |
| rs12275051 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs12275529 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs12280070 | 0.94[EUR][1000 genomes] |
| rs12282675 | 0.94[EUR][1000 genomes] |
| rs12283683 | 1.00[CEU][hapmap] |
| rs12286025 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs12286565 | 1.00[CEU][hapmap];0.94[EUR][1000 genomes] |
| rs12289688 | 1.00[CEU][hapmap];0.94[EUR][1000 genomes] |
| rs12290311 | 0.97[EUR][1000 genomes] |
| rs12291567 | 1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.86[AMR][1000 genomes] |
| rs12294444 | 0.87[CEU][hapmap] |
| rs12294547 | 0.94[EUR][1000 genomes] |
| rs12295053 | 1.00[CEU][hapmap];0.94[EUR][1000 genomes] |
| rs12575693 | 0.89[EUR][1000 genomes] |
| rs1483410 | 0.83[EUR][1000 genomes] |
| rs17146592 | 1.00[CEU][hapmap] |
| rs2514164 | 0.80[CEU][hapmap] |
| rs28673785 | 0.84[EUR][1000 genomes] |
| rs4433587 | 0.83[EUR][1000 genomes] |
| rs56209818 | 0.94[EUR][1000 genomes] |
| rs7115622 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs73513704 | 0.92[EUR][1000 genomes] |
| rs7936423 | 0.83[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv898025 | chr11:83658909-83796678 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 2 | nsv1039924 | chr11:83662904-83993497 | Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv541102 | chr11:83662904-83993497 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv898026 | chr11:83685801-83789540 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 5 | esv1814410 | chr11:83696133-83775326 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:83713000-83713800 | ZNF genes & repeats | Liver | Liver |
| 2 | chr11:83713200-83714800 | ZNF genes & repeats | Adipose Nuclei | Adipose |
| 3 | chr11:83713400-83714800 | ZNF genes & repeats | Brain Hippocampus Middle | brain |
