Variant report

Variant	rs12286025
Chromosome Location	chr11:83747028-83747029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10160486	0.87[CEU][hapmap]
rs11233873	1.00[CEU][hapmap]
rs11233878	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11233885	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11233886	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11233887	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11233888	1.00[EUR][1000 genomes]
rs11233889	0.95[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs11233891	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11233892	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11501812	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs12274345	1.00[CEU][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12275051	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12275529	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12280070	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12282675	0.98[EUR][1000 genomes]
rs12283683	1.00[CEU][hapmap]
rs12286565	1.00[CEU][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12289688	1.00[CEU][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12290311	0.95[EUR][1000 genomes]
rs12294444	0.87[CEU][hapmap]
rs12294547	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12295053	1.00[CEU][hapmap];0.84[YRI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12575693	0.97[EUR][1000 genomes]
rs1483410	0.90[EUR][1000 genomes]
rs1544275	0.88[AFR][1000 genomes]
rs17146592	1.00[CEU][hapmap]
rs2514164	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs28673785	0.92[EUR][1000 genomes]
rs4433587	0.87[EUR][1000 genomes]
rs56209818	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7115622	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs73513704	1.00[EUR][1000 genomes]
rs7932501	1.00[CEU][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv898026	chr11:83685801-83789540	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv1814410	chr11:83696133-83775326	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv1809938	chr11:83716145-83789540	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv898027	chr11:83717887-83798485	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv898028	chr11:83717887-83817360	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv898030	chr11:83730570-83789540	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv1806027	chr11:83740599-83775326	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83745800-83748200	Enhancers	Colon Smooth Muscle	Colon
2	chr11:83746200-83748000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr11:83746800-83748000	Weak transcription	Stomach Smooth Muscle	stomach

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